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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12805 and 12806 are separated by 523 nucleotides
12806 and 12807 are separated by 193 nucleotides
12807 and 12808 are separated by 283 nucleotides
12808 and 12809 are separated by 488 nucleotides
mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179,176 to 181,994
12805
mRNA_4438: 12806 - Hypothetical Protein, at 182,518 to 183,149
12806
mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707
12807
mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593
12808
mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392
12809
Group
Condition
mRNA
_4437
mRNA
_4438
mRNA
_4439
mRNA
_4440
mRNA
_4441
12805
12806
12807
12808
12809
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.1
-0.7
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.8
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose
-0.7
+0.0
-0.8
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.1
-0.3
N.D.
+0.4
growth on oleic acid
YNB Glucose
-0.9
-0.0
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.6
-0.1
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.4
-1.1
N.D.
+0.2
auxotrophy
Dropout Complete
-0.7
-0.1
+0.0
N.D.
-0.0
growth on ypd
YPD
+0.1
-0.3
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.8
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.2
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.2
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.3
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.7
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.8
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.4
+0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.6
N.D.
+0.3
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