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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12807 and 12808 are separated by 283 nucleotides
12808 and 12809 are separated by 488 nucleotides
12809 and 12810 are separated by 183 nucleotides
12810 and 12811 are separated by 625 nucleotides
mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707
12807
mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593
12808
mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392
12809
mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157
12810
mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190,783 to 192,210
12811
Group
Condition
mRNA
_4439
mRNA
_4440
mRNA
_4441
mRNA
_4442
mRNA
_4443
12807
12808
12809
12810
12811
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.0
+0.1
-1.1
growth on ypd
YPD
-0.5
N.D.
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
N.D.
-0.1
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
N.D.
+0.2
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
+0.1
+0.0
+0.1
auxotrophy
YNB Glucose
-0.8
N.D.
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.2
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
-0.1
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.4
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.4
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+0.3
-0.5
-0.3
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.1
+0.0
auxotrophy
Dropout Complete
+0.0
N.D.
-0.0
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.4
+0.5
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.1
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.3
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
N.D.
+0.0
+0.3
+0.2
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