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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12808 and 12809 are separated by 488 nucleotides
12809 and 12810 are separated by 183 nucleotides
12810 and 12811 are separated by 625 nucleotides
12811 and 12812 are separated by 597 nucleotides
mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593
12808
mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392
12809
mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157
12810
mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190,783 to 192,210
12811
mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192,808 to 197,198
12812
Group
Condition
mRNA
_4440
mRNA
_4441
mRNA
_4442
mRNA
_4443
mRNA
_4444
12808
12809
12810
12811
12812
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.1
-1.1
N.D.
growth on ypd
YPD
N.D.
-0.1
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.0
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.0
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
+0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.5
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
+0.3
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
+0.4
N.D.
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