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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12810 and 12811 are separated by 625 nucleotides
12811 and 12812 are separated by 597 nucleotides
12812 and 12813 are separated by 126 nucleotides
12813 and 12814 are separated by 256 nucleotides
mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188,576 to 190,157
12810
mRNA_4443: 12811 - SUPERFAMILY--SSF52047, at 190,783 to 192,210
12811
mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192,808 to 197,198
12812
mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197,325 to 199,939
12813
mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838
12814
Group
Condition
mRNA
_4442
mRNA
_4443
mRNA
_4444
mRNA
_4445
mRNA
_4446
12810
12811
12812
12813
12814
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.4
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
N.D.
-0.1
-0.0
growth on ypd
YPD
-0.1
-0.3
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.3
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.0
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
N.D.
-0.2
+0.1
auxotrophy
Dropout Complete
+0.2
+0.2
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
N.D.
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.4
N.D.
-0.0
-0.3
growth on oleic acid
YNB Glucose
+0.1
+0.2
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
N.D.
+0.3
+0.1
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