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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12813 and 12814 are separated by 256 nucleotides
12814 and 12815 are separated by 220 nucleotides
12815 and 12816 are separated by 89 nucleotides
12816 and 12817 are separated by 90 nucleotides
mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197,325 to 199,939
12813
mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838
12814
mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204,059 to 206,130
12815
mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206,220 to 210,253
12816
mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336
12817
Group
Condition
mRNA
_4445
mRNA
_4446
mRNA
_4447
mRNA
_4448
mRNA
_4449
12813
12814
12815
12816
12817
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
-0.2
-2.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
N.D.
-0.3
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
-0.6
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
N.D.
-0.0
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
N.D.
-0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
N.D.
+0.0
+0.5
auxotrophy
Dropout Complete
+0.2
-0.0
N.D.
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
-0.1
+0.3
growth on ypd
YPD
+0.2
+0.2
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose
+0.4
+0.1
N.D.
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
N.D.
-0.0
+0.6
growth on oleic acid
YNB Glucose
+0.2
+0.2
N.D.
+0.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
N.D.
-0.3
+1.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
N.D.
+0.1
+0.9
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