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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12814 and 12815 are separated by 220 nucleotides
12815 and 12816 are separated by 89 nucleotides
12816 and 12817 are separated by 90 nucleotides
12817 and 12818 are separated by 186 nucleotides
mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838
12814
mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204,059 to 206,130
12815
mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206,220 to 210,253
12816
mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336
12817
mRNA_4450: 12818 - Hypothetical Protein, at 212,523 to 213,518
12818
Group
Condition
mRNA
_4446
mRNA
_4447
mRNA
_4448
mRNA
_4449
mRNA
_4450
12814
12815
12816
12817
12818
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
-2.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.3
-1.3
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
-0.8
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.1
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.6
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.0
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.1
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.0
+0.5
-0.0
growth on ypd
YPD
+0.2
N.D.
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.0
+0.1
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
-0.1
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.1
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.1
+0.3
+0.4
auxotrophy
Dropout Complete
-0.0
N.D.
+0.0
+0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.0
+0.6
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.3
+1.3
+0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.2
+0.6
+0.7
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
+0.9
+0.6
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