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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12817 and 12818 are separated by 186 nucleotides
12818 and 12819 are separated by 989 nucleotides
12819 and 12820 are separated by 370 nucleotides
12820 and 12821 are separated by 169 nucleotides
mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336
12817
mRNA_4450: 12818 - Hypothetical Protein, at 212,523 to 213,518
12818
mRNA_4451: 12819 - K03355 APC8, CDC23 anaphase-promoting complex subunit 8, at 214,508 to 216,794
12819
mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217,165 to 218,716
12820
mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218,886 to 222,303
12821
Group
Condition
mRNA
_4449
mRNA
_4450
mRNA
_4451
mRNA
_4452
mRNA
_4453
12817
12818
12819
12820
12821
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.6
N.D.
-0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-2.6
+0.0
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
N.D.
-0.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.0
N.D.
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.4
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.6
N.D.
+0.2
-0.0
growth on ypd
YPD
+0.1
-0.2
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.4
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.0
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
N.D.
-0.0
+0.3
auxotrophy
Dropout Complete
+0.4
+0.5
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose
+0.4
+0.2
N.D.
+0.4
+0.3
growth on oleic acid
YNB Glucose
+0.6
+0.7
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.4
N.D.
+0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.3
+0.4
N.D.
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.9
+0.6
N.D.
+0.3
+0.1
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