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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12820 and 12821 are separated by 169 nucleotides
12821 and 12822 are separated by 869 nucleotides
12822 and 12823 are separated by 185 nucleotides
12823 and 12824 are separated by 120 nucleotides
mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217,165 to 218,716
12820
mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218,886 to 222,303
12821
mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223,173 to 226,550
12822
mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226,736 to 228,552
12823
mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476
12824
Group
Condition
mRNA
_4452
mRNA
_4453
mRNA
_4454
mRNA
_4455
mRNA
_4456
12820
12821
12822
12823
12824
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.2
+0.0
-0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.0
-0.0
-0.5
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.1
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.0
-0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
-0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.0
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.2
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.0
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.1
+0.2
-0.1
growth on ypd
YPD
-0.1
-0.1
+0.2
+0.5
-0.0
auxotrophy
YNB Glucose
+0.4
+0.3
-0.2
-0.1
+0.1
auxotrophy
Dropout Complete
+0.0
+0.2
+0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.3
+0.0
+0.3
-0.2
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