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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12821 and 12822 are separated by 869 nucleotides
12822 and 12823 are separated by 185 nucleotides
12823 and 12824 are separated by 120 nucleotides
12824 and 12825 are separated by 681 nucleotides
mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218,886 to 222,303
12821
mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223,173 to 226,550
12822
mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226,736 to 228,552
12823
mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476
12824
mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825
12825
Group
Condition
mRNA
_4453
mRNA
_4454
mRNA
_4455
mRNA
_4456
mRNA
_4457
12821
12822
12823
12824
12825
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.4
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
-0.5
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
-0.1
+0.1
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.0
+0.2
-0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.0
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.1
-0.2
-0.5
auxotrophy
YNB Glucose
+0.3
-0.2
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
+0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.2
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.2
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
+0.1
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-0.0
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.3
-0.1
+0.1
auxotrophy
Dropout Complete
+0.2
+0.1
+0.3
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.3
-0.2
+0.2
growth on ypd
YPD
-0.1
+0.2
+0.5
-0.0
+0.4
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