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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12823 and 12824 are separated by 120 nucleotides
12824 and 12825 are separated by 681 nucleotides
12825 and 12826 are separated by 285 nucleotides
12826 and 12827 are separated by 327 nucleotides
mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226,736 to 228,552
12823
mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476
12824
mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825
12825
mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233,111 to 233,901
12826
mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234,229 to 236,969
12827
Group
Condition
mRNA
_4455
mRNA
_4456
mRNA
_4457
mRNA
_4458
mRNA
_4459
12823
12824
12825
12826
12827
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
-0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
-0.1
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.5
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.5
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.4
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.0
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
-0.1
+0.1
-0.3
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.0
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
+0.2
N.D.
+0.5
auxotrophy
Dropout Complete
+0.3
-0.0
-0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
+0.2
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
+0.2
N.D.
+0.9
growth on ypd
YPD
+0.5
-0.0
+0.4
N.D.
+0.4
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