Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12824 and 12825 are separated by 681 nucleotides12825 and 12826 are separated by 285 nucleotides12826 and 12827 are separated by 327 nucleotides12827 and 12828 are separated by 653 nucleotides mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476 12824 mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825 12825 mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233,111 to 233,901 12826 mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234,229 to 236,969 12827 mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720 12828
Group Condition mRNA_4456 mRNA_4457 mRNA_4458 mRNA_4459 mRNA_4460
12824 12825 12826 12827 12828
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.0 N.D. +0.1 -1.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.3 N.D. -0.1 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.1 N.D. -0.4 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.1 N.D. -0.6 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.1 N.D. -0.3 -0.2
growth on oleic acid YNB Glucose -0.2 -0.5 N.D. +0.3 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.3 N.D. -0.5 +0.5
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.1 N.D. -0.2 +0.2
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.0 N.D. +0.3 -0.2
growth on oleic acid YNB Oleic Acid -0.2 -0.5 N.D. +0.4 +0.4
growth on ricinoleic acid YNB Glucose +0.1 -0.4 N.D. +0.3 +0.2
auxotrophy Dropout Complete -0.0 -0.0 N.D. +0.4 +0.0
auxotrophy YNB Glucose +0.1 -0.3 N.D. +0.5 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.0 N.D. +0.1 +0.5
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.2 N.D. +0.5 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 +0.2 N.D. +0.5 +0.2
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1 N.D. +0.3 +0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.0 +0.2 N.D. +0.1 +0.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.1 N.D. +0.5 +0.5
growth on ypd YPD -0.0 +0.4 N.D. +0.4 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 +0.2 N.D. +0.9 +1.0
remove
mRNA_4456
plot
remove
mRNA_4457
plot
remove
mRNA_4458
remove
mRNA_4459
plot
remove
mRNA_4460
plot