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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12825 and 12826 are separated by 285 nucleotides
12826 and 12827 are separated by 327 nucleotides
12827 and 12828 are separated by 653 nucleotides
12828 and 12829 are separated by 368 nucleotides
mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825
12825
mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233,111 to 233,901
12826
mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234,229 to 236,969
12827
mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720
12828
mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239,089 to 240,569
12829
Group
Condition
mRNA
_4457
mRNA
_4458
mRNA
_4459
mRNA
_4460
mRNA
_4461
12825
12826
12827
12828
12829
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.4
-0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.1
-1.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.6
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.3
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.5
+0.5
-0.1
auxotrophy
Dropout Complete
-0.0
N.D.
+0.4
+0.0
-0.6
auxotrophy
YNB Glucose
-0.3
N.D.
+0.5
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.3
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.5
N.D.
+0.3
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.3
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.5
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.5
N.D.
+0.4
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.5
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
+0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.5
+0.2
growth on ypd
YPD
+0.4
N.D.
+0.4
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.5
+0.5
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.1
+0.5
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.9
+1.0
+0.1
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