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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12827 and 12828 are separated by 653 nucleotides
12828 and 12829 are separated by 368 nucleotides
12829 and 12830 are separated by 1272 nucleotides
12830 and 12831 are separated by 706 nucleotides
mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234,229 to 236,969
12827
mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720
12828
mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239,089 to 240,569
12829
mRNA_4462: 12830 - Hypothetical Protein, at 241,842 to 242,730
12830
mRNA_4463: 12831 - Hypothetical Protein, at 243,437 to 244,042
12831
Group
Condition
mRNA
_4459
mRNA
_4460
mRNA
_4461
mRNA
_4462
mRNA
_4463
12827
12828
12829
12830
12831
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.0
+0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
+0.2
+0.1
+0.0
auxotrophy
Dropout Complete
+0.4
+0.0
-0.6
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.5
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.2
+0.2
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
-0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.1
-0.2
-0.2
auxotrophy
YNB Glucose
+0.5
-0.0
-0.3
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.5
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.1
-0.2
+0.0
-0.1
growth on ypd
YPD
+0.4
+0.2
-0.1
+0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
+0.2
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.2
-0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.3
+0.2
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.5
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.5
-0.0
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
+0.2
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
+0.4
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+1.0
+0.1
-0.1
+0.1
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