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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12835 and 12836 are separated by 923 nucleotides
12836 and 12837 are separated by 302 nucleotides
12837 and 12838 are separated by 475 nucleotides
12838 and 12839 are separated by 1122 nucleotides
mRNA_4467: 12835 - Hypothetical Protein, at 250,671 to 251,291
12835
mRNA_4468: 12836 - K11866 STAMBP, AMSH STAM-binding protein, at 252,215 to 253,594
12836
mRNA_4469: 12837 - Hypothetical Protein, at 253,897 to 255,507
12837
mRNA_4470: 12838 - K05292 PIGT phosphatidylinositol glycan, class T, at 255,983 to 257,580
12838
mRNA_4471: 12839 - Hypothetical Protein, at 258,703 to 259,601
12839
Group
Condition
mRNA
_4467
mRNA
_4468
mRNA
_4469
mRNA
_4470
mRNA
_4471
12835
12836
12837
12838
12839
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.5
-0.2
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
-0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.6
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
-0.5
N.D.
-0.2
auxotrophy
Dropout Complete
-0.5
-0.5
+0.4
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.3
N.D.
-0.2
growth on ypd
YPD
-0.1
+0.3
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
+0.4
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
-0.4
+0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
-0.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.4
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.7
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.7
-0.4
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.8
+0.7
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+1.0
-0.2
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.5
+0.7
-0.2
N.D.
-0.1
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