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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12839 and 12840 are separated by 1690 nucleotides
12840 and 12841 are separated by 2194 nucleotides
12841 and 12842 are separated by 138 nucleotides
12842 and 12843 are separated by 642 nucleotides
mRNA_4471: 12839 - Hypothetical Protein, at 258,703 to 259,601
12839
mRNA_4472: 12840 - Hypothetical Protein, at 261,292 to 263,217
12840
mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265,412 to 268,856
12841
mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268,995 to 271,231
12842
mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271,874 to 274,192
12843
Group
Condition
mRNA
_4471
mRNA
_4472
mRNA
_4473
mRNA
_4474
mRNA
_4475
12839
12840
12841
12842
12843
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
N.D.
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.2
N.D.
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
N.D.
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
N.D.
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
N.D.
+0.1
N.D.
auxotrophy
Dropout Complete
+0.3
-0.3
N.D.
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
N.D.
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
-0.0
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.3
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
N.D.
+0.4
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
N.D.
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
+0.5
N.D.
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