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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12841 and 12842 are separated by 138 nucleotides
12842 and 12843 are separated by 642 nucleotides
12843 and 12844 are separated by 263 nucleotides
12844 and 12845 are separated by 570 nucleotides
mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265,412 to 268,856
12841
mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268,995 to 271,231
12842
mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271,874 to 274,192
12843
mRNA_4476: 12844 - HMMPfam-Domain of unknown function (DUF543)-PF04418, at 274,456 to 275,559
12844
mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276,130 to 277,462
12845
Group
Condition
mRNA
_4473
mRNA
_4474
mRNA
_4475
mRNA
_4476
mRNA
_4477
12841
12842
12843
12844
12845
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
N.D.
-1.9
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
-1.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.2
-1.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.6
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.4
+0.2
auxotrophy
Dropout Complete
N.D.
+0.0
N.D.
+0.2
-0.3
growth on ypd
YPD
N.D.
-0.0
N.D.
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
N.D.
-0.7
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
+0.5
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
N.D.
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.6
+0.5
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