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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12843 and 12844 are separated by 263 nucleotides
12844 and 12845 are separated by 570 nucleotides
12845 and 12846 are separated by 511 nucleotides
12846 and 12847 are separated by 606 nucleotides
mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271,874 to 274,192
12843
mRNA_4476: 12844 - HMMPfam-Domain of unknown function (DUF543)-PF04418, at 274,456 to 275,559
12844
mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276,130 to 277,462
12845
mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277,974 to 281,759
12846
mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282,366 to 283,335
12847
Group
Condition
mRNA
_4475
mRNA
_4476
mRNA
_4477
mRNA
_4478
mRNA
_4479
12843
12844
12845
12846
12847
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.9
-0.3
+0.2
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.0
-0.0
-3.9
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-1.0
-0.2
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.2
-0.2
+0.2
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.3
+0.2
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.3
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.2
+0.1
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
-0.7
+0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
-0.4
-0.0
+0.5
growth on ypd
YPD
N.D.
+0.4
-0.4
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
+0.5
-0.1
-1.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.6
-0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
+0.2
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.0
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.4
+0.4
+0.6
auxotrophy
YNB Glucose
N.D.
-0.3
-0.2
+0.4
+0.6
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.5
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.4
-0.2
+1.3
auxotrophy
Dropout Complete
N.D.
+0.2
-0.3
+0.3
+0.7
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
+0.1
-0.0
+0.8
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