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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12848 and 12849 are separated by 199 nucleotides
12849 and 12850 are separated by 315 nucleotides
12850 and 12851 are separated by 107 nucleotides
12851 and 12852 are separated by 153 nucleotides
mRNA_4480: 12848 - Hypothetical Protein, at 283,832 to 284,551
12848
mRNA_4481: 12849 - Hypothetical Protein, at 284,751 to 285,386
12849
mRNA_4482: 12850 - K03144 TFIIH4, GTF2H4, TFB2 transcription initiation factor TFIIH subunit 4, at 285,702 to 287,837
12850
mRNA_4483: 12851 - SUPERFAMILY--SSF53098, at 287,945 to 289,726
12851
mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289,880 to 293,833
12852
Group
Condition
mRNA
_4480
mRNA
_4481
mRNA
_4482
mRNA
_4483
mRNA
_4484
12848
12849
12850
12851
12852
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
N.D.
N.D.
-2.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
N.D.
N.D.
-2.9
auxotrophy
YNB Glucose
+0.1
-0.4
N.D.
N.D.
-0.9
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
N.D.
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
+0.1
-0.5
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.8
N.D.
N.D.
-0.8
growth on ypd
YPD
+0.2
-0.0
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.7
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
N.D.
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.5
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.9
N.D.
N.D.
+0.3
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