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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12852 and 12853 are separated by 222 nucleotides
12853 and 12854 are separated by 273 nucleotides
12854 and 12855 are separated by 719 nucleotides
12855 and 12856 are separated by 336 nucleotides
mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289,880 to 293,833
12852
mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294,056 to 296,303
12853
mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296,577 to 298,255
12854
mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181
12855
mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496
12856
Group
Condition
mRNA
_4484
mRNA
_4485
mRNA
_4486
mRNA
_4487
mRNA
_4488
12852
12853
12854
12855
12856
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.9
+0.3
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.8
+0.6
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.0
-0.8
N.D.
N.D.
auxotrophy
YNB Glucose
-0.9
+0.1
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
+0.3
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.1
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.0
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
-0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.6
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.7
+0.7
N.D.
N.D.
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