Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12852 and 12853 are separated by 222 nucleotides12853 and 12854 are separated by 273 nucleotides12854 and 12855 are separated by 719 nucleotides12855 and 12856 are separated by 336 nucleotides mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289,880 to 293,833 12852 mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294,056 to 296,303 12853 mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296,577 to 298,255 12854 mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181 12855 mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496 12856
Group Condition mRNA_4484 mRNA_4485 mRNA_4486 mRNA_4487 mRNA_4488
12852 12853 12854 12855 12856
growth on ricinoleic acid YNB Ricinoleic Acid -2.9 +0.3 +0.1 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -2.8 +0.6 +0.1 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -1.0 -0.8 N.D. N.D.
auxotrophy YNB Glucose -0.9 +0.1 +0.3 N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.8 +0.3 +0.1 N.D. N.D.
growth on ypd YPD -0.1 -0.2 -0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.8 -0.0 +0.5 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.0 -0.1 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.1 +0.2 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.3 -0.2 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.0 +0.4 N.D. N.D.
growth on oleic acid YNB Glucose +0.1 -0.2 +0.3 N.D. N.D.
growth on oleic acid YNB Oleic Acid +0.3 -0.2 +0.1 N.D. N.D.
auxotrophy Dropout Complete +0.2 -0.1 +0.2 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.3 +0.3 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.3 +0.3 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.3 +0.1 +0.1 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.1 +0.2 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.3 +0.6 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.2 +0.6 +0.5 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.7 +0.7 N.D. N.D.
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