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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12853 and 12854 are separated by 273 nucleotides
12854 and 12855 are separated by 719 nucleotides
12855 and 12856 are separated by 336 nucleotides
12856 and 12857 are separated by 215 nucleotides
mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294,056 to 296,303
12853
mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296,577 to 298,255
12854
mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181
12855
mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496
12856
mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024
12857
Group
Condition
mRNA
_4485
mRNA
_4486
mRNA
_4487
mRNA
_4488
mRNA
_4489
12853
12854
12855
12856
12857
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.8
N.D.
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
N.D.
N.D.
-0.8
growth on ypd
YPD
-0.2
-0.1
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
+0.2
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.3
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.6
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.5
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.5
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.7
N.D.
N.D.
+0.3
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