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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12855 and 12856 are separated by 336 nucleotides
12856 and 12857 are separated by 215 nucleotides
12857 and 12858 are separated by 436 nucleotides
12858 and 12859 are separated by 225 nucleotides
mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181
12855
mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496
12856
mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024
12857
mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865
12858
mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232
12859
Group
Condition
mRNA
_4487
mRNA
_4488
mRNA
_4489
mRNA
_4490
mRNA
_4491
12855
12856
12857
12858
12859
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.4
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.8
-0.4
+0.6
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.0
-0.3
+0.4
growth on ypd
YPD
N.D.
N.D.
-0.0
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
-0.2
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
+0.3
-0.1
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