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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12856 and 12857 are separated by 215 nucleotides
12857 and 12858 are separated by 436 nucleotides
12858 and 12859 are separated by 225 nucleotides
12859 and 12860 are separated by 672 nucleotides
mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496
12856
mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024
12857
mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865
12858
mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232
12859
mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384
12860
Group
Condition
mRNA
_4488
mRNA
_4489
mRNA
_4490
mRNA
_4491
mRNA
_4492
12856
12857
12858
12859
12860
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.1
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.8
-0.4
+0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.2
-0.0
-0.5
auxotrophy
YNB Glucose
N.D.
-0.4
-0.3
+0.1
+0.3
auxotrophy
Dropout Complete
N.D.
-0.1
-0.4
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.3
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
+0.3
-0.1
-0.5
growth on ypd
YPD
N.D.
-0.0
-0.3
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
-0.2
+0.6
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.3
+0.1
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