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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12857 and 12858 are separated by 436 nucleotides
12858 and 12859 are separated by 225 nucleotides
12859 and 12860 are separated by 672 nucleotides
12860 and 12861 are separated by 191 nucleotides
mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024
12857
mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865
12858
mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232
12859
mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384
12860
mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024
12861
Group
Condition
mRNA
_4489
mRNA
_4490
mRNA
_4491
mRNA
_4492
mRNA
_4493
12857
12858
12859
12860
12861
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.2
-0.2
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.1
+0.0
+0.1
auxotrophy
Dropout Complete
-0.1
-0.4
+0.1
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.5
-0.1
-0.8
auxotrophy
YNB Glucose
-0.4
-0.3
+0.1
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
+0.1
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.3
-0.1
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.1
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.5
+0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.0
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
+0.1
-0.5
growth on ypd
YPD
-0.0
-0.3
+0.5
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.1
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.4
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.8
-0.4
+0.6
+0.2
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.6
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
+0.1
+0.2
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.3
+0.4
+0.1
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.2
-0.1
+1.2
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