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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12858 and 12859 are separated by 225 nucleotides
12859 and 12860 are separated by 672 nucleotides
12860 and 12861 are separated by 191 nucleotides
12861 and 12862 are separated by 296 nucleotides
mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865
12858
mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232
12859
mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384
12860
mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024
12861
mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953
12862
Group
Condition
mRNA
_4490
mRNA
_4491
mRNA
_4492
mRNA
_4493
mRNA
_4494
12858
12859
12860
12861
12862
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.2
-1.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.5
-0.5
-0.0
auxotrophy
Dropout Complete
-0.4
+0.1
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.5
-0.2
+0.0
auxotrophy
YNB Glucose
-0.3
+0.1
+0.3
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.1
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.0
+0.1
-0.2
growth on ypd
YPD
-0.3
+0.5
+0.1
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.5
-0.1
-0.8
+0.4
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.2
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.0
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.5
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
-0.1
+1.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.2
+0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.6
-0.1
+0.7
+0.4
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
+0.2
+0.9
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.4
+0.1
+1.1
+0.4
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