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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12859 and 12860 are separated by 672 nucleotides
12860 and 12861 are separated by 191 nucleotides
12861 and 12862 are separated by 296 nucleotides
12862 and 12863 are separated by 156 nucleotides
mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232
12859
mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384
12860
mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024
12861
mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953
12862
mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762
12863
Group
Condition
mRNA
_4491
mRNA
_4492
mRNA
_4493
mRNA
_4494
mRNA
_4495
12859
12860
12861
12862
12863
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.5
-0.0
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-1.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.5
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
-0.2
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.1
-0.8
+0.4
-0.2
auxotrophy
YNB Glucose
+0.1
+0.3
-0.1
-0.5
+0.1
auxotrophy
Dropout Complete
+0.1
+0.1
-0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
-0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+1.2
-0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.0
-0.3
+0.6
growth on ypd
YPD
+0.5
+0.1
-0.1
-0.4
+0.5
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.3
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.5
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.9
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.1
+0.7
+0.4
+0.6
growth on ricinoleic acid
YNB Glucose
+0.6
+0.2
+0.9
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
+1.1
+0.4
+0.6
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