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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12862 and 12863 are separated by 156 nucleotides
12863 and 12864 are separated by 284 nucleotides
12864 and 12865 are separated by 1764 nucleotides
12865 and 12866 are separated by 542 nucleotides
mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953
12862
mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762
12863
mRNA_4496: 12864 - SUPERFAMILY--SSF81383, at 317,047 to 318,791
12864
mRNA_4497: 12865 - SUPERFAMILY--SSF81383, at 320,556 to 322,046
12865
mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741
12866
Group
Condition
mRNA
_4494
mRNA
_4495
mRNA
_4496
mRNA
_4497
mRNA
_4498
12862
12863
12864
12865
12866
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.4
-0.6
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.6
-0.2
-0.0
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.6
-0.2
-0.3
auxotrophy
YNB Glucose
-0.5
+0.1
+0.3
+0.1
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.4
-0.1
+0.0
auxotrophy
Dropout Complete
-0.2
+0.2
+0.2
+0.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.5
+0.0
-0.5
growth on ypd
YPD
-0.4
+0.5
+0.0
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.6
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.8
-0.1
+0.1
+1.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
-0.2
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.0
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.2
+0.0
+0.7
growth on ricinoleic acid
YNB Glucose
+0.4
+0.3
-0.0
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.2
+0.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
+0.2
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.6
-0.0
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.3
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.6
+0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.4
+0.2
+1.2
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