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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12863 and 12864 are separated by 284 nucleotides
12864 and 12865 are separated by 1764 nucleotides
12865 and 12866 are separated by 542 nucleotides
12866 and 12867 are separated by 142 nucleotides
mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762
12863
mRNA_4496: 12864 - SUPERFAMILY--SSF81383, at 317,047 to 318,791
12864
mRNA_4497: 12865 - SUPERFAMILY--SSF81383, at 320,556 to 322,046
12865
mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741
12866
mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323,884 to 327,513
12867
Group
Condition
mRNA
_4495
mRNA
_4496
mRNA
_4497
mRNA
_4498
mRNA
_4499
12863
12864
12865
12866
12867
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.6
-0.3
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.6
-0.2
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
-0.1
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.2
-0.0
-1.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.0
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
+0.1
+1.0
-0.4
auxotrophy
Dropout Complete
+0.2
+0.2
+0.0
-0.7
+0.2
auxotrophy
YNB Glucose
+0.1
+0.3
+0.1
-0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
+0.1
-0.3
-0.0
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.1
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
+0.0
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+0.1
-0.5
+0.1
growth on ypd
YPD
+0.5
+0.0
-0.4
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.0
+0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.0
+0.7
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
+0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
+0.2
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.2
+0.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.2
+0.3
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.2
+1.2
+0.1
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