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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12866 and 12867 are separated by 142 nucleotides
12867 and 12868 are separated by 210 nucleotides
12868 and 12869 are separated by 172 nucleotides
12869 and 12870 are separated by 342 nucleotides
mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741
12866
mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323,884 to 327,513
12867
mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327,724 to 330,564
12868
mRNA_4501: 12869 - Hypothetical Protein, at 330,737 to 332,545
12869
mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332,888 to 334,792
12870
Group
Condition
mRNA
_4498
mRNA
_4499
mRNA
_4500
mRNA
_4501
mRNA
_4502
12866
12867
12868
12869
12870
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.2
-0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
+0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
-0.2
-0.0
-0.1
auxotrophy
YNB Glucose
-0.7
+0.2
+0.2
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.1
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.0
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.1
+0.3
+0.1
auxotrophy
Dropout Complete
-0.7
+0.2
+0.4
+0.3
+0.1
growth on ypd
YPD
+0.2
-0.1
+0.0
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.0
+0.2
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
+0.1
+0.3
+0.3
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.4
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.4
-0.1
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.4
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.0
+0.3
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
+0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.0
+0.2
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
+0.1
+0.0
+0.5
+0.1
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