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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12868 and 12869 are separated by 172 nucleotides
12869 and 12870 are separated by 342 nucleotides
12870 and 12871 are separated by 306 nucleotides
12871 and 12872 are separated by 546 nucleotides
mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327,724 to 330,564
12868
mRNA_4501: 12869 - Hypothetical Protein, at 330,737 to 332,545
12869
mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332,888 to 334,792
12870
mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335,099 to 337,846
12871
mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917
12872
Group
Condition
mRNA
_4500
mRNA
_4501
mRNA
_4502
mRNA
_4503
mRNA
_4504
12868
12869
12870
12871
12872
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.0
-2.0
-0.0
growth on ypd
YPD
+0.0
+0.0
+0.0
-0.7
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.2
-0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
-0.1
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.3
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.1
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
+0.1
+0.0
+0.1
auxotrophy
YNB Glucose
+0.2
+0.3
+0.1
+0.5
-0.3
auxotrophy
Dropout Complete
+0.4
+0.3
+0.1
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
+0.0
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.6
+0.0
+0.5
-0.5
growth on oleic acid
YNB Glucose
+0.4
+0.2
+0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.5
+0.1
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
+0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
-0.1
-0.1
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.1
+0.5
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.2
+0.5
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
+0.1
+0.7
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.3
+0.8
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.3
-0.1
+1.3
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