Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12870 and 12871 are separated by 306 nucleotides12871 and 12872 are separated by 546 nucleotides12872 and 12873 are separated by 63 nucleotides12873 and 12874 overlap by 2 nucleotides mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332,888 to 334,792 12870 mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335,099 to 337,846 12871 mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917 12872 mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395 12873 mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874
Group Condition mRNA_4502 mRNA_4503 mRNA_4504 mRNA_4505 mRNA_4506
12870 12871 12872 12873 12874
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 -2.0 -0.0 +0.4 -0.8
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.3 -0.5 +0.0 -1.0
growth on ypd YPD +0.0 -0.7 -0.5 +0.7 -0.4
growth on oleic acid YNB Oleic Acid +0.1 +0.0 +0.1 -0.3 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.0 -0.4 -0.1 -0.0
growth on ricinoleic acid YNB Glucose -0.2 -0.3 +0.3 -0.1 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.0 +0.1 +0.2 -0.8
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 +0.5 -0.5 -0.1 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.1 +0.6 +0.0 -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.6 +0.2 +0.6 -0.2
growth on oleic acid YNB Glucose +0.3 -0.2 +0.2 -0.1 -0.1
auxotrophy Dropout Complete +0.1 -0.2 +0.2 +0.4 -0.3
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.3 +0.1 +0.1 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.4 -0.1 +0.4 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.5 +1.0 +0.0 -0.5
auxotrophy YNB Glucose +0.1 +0.5 -0.3 +0.6 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.3 +0.8 +0.0 +0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.7 +0.2 +0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.5 +0.9 -0.0 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 -0.3 +0.7 +0.4 +0.8
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.1 +1.3 +0.7 +0.3
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