Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12871 and 12872 are separated by 546 nucleotides
12872 and 12873 are separated by 63 nucleotides
12873 and 12874 overlap by 2 nucleotides
12874 and 12875 are separated by 258 nucleotides
mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335,099 to 337,846
12871
mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917
12872
mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395
12873
mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797
12874
mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749
12875
Group
Condition
mRNA
_4503
mRNA
_4504
mRNA
_4505
mRNA
_4506
mRNA
_4507
12871
12872
12873
12874
12875
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.0
+0.4
-0.8
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.5
+0.0
-1.0
-0.4
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.3
-0.7
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.6
+0.0
-0.5
-0.8
growth on ypd
YPD
-0.7
-0.5
+0.7
-0.4
+0.2
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
-0.1
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
-0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.2
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.5
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.2
+0.6
-0.2
-0.1
auxotrophy
Dropout Complete
-0.2
+0.2
+0.4
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
+0.4
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.0
+0.2
-0.1
+0.0
auxotrophy
YNB Glucose
+0.5
-0.3
+0.6
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+1.0
+0.0
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.2
+0.4
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.9
-0.0
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.7
+0.4
+0.8
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+1.3
+0.7
+0.3
+0.3
remove
mRNA_4503
plot
remove
mRNA_4504
plot
remove
mRNA_4505
remove
mRNA_4506
plot
remove
mRNA_4507
plot