Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12872 and 12873 are separated by 63 nucleotides12873 and 12874 overlap by 2 nucleotides12874 and 12875 are separated by 258 nucleotides12875 and 12876 are separated by 308 nucleotides mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917 12872 mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395 12873 mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874 mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136 12876
Group Condition mRNA_4504 mRNA_4505 mRNA_4506 mRNA_4507 mRNA_4508
12872 12873 12874 12875 12876
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 +0.0 -1.0 -0.4 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 +0.4 -0.8 -0.4 -0.7
growth on oleic acid YNB Oleic Acid +0.1 -0.3 -0.7 +0.0 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 +0.0 -0.5 -0.8 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.1 +0.0 -0.1 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.1 -0.4 -0.1 +0.1
growth on oleic acid YNB Glucose +0.2 -0.1 -0.1 -0.3 +0.2
growth on ypd YPD -0.5 +0.7 -0.4 +0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.2 -0.8 +0.1 +0.3
growth on ricinoleic acid YNB Glucose +0.3 -0.1 -0.3 -0.0 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.4 -0.2 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.1 -0.0 +0.2 +0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.6 -0.2 -0.1 -0.4
auxotrophy Dropout Complete +0.2 +0.4 -0.3 -0.1 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.4 -0.2 -0.1 +0.2
auxotrophy YNB Glucose 75mM Arginine +0.0 +0.2 -0.1 +0.0 +0.5
ypd buoyancy 40 hrs Low Buoyancy +1.0 +0.0 -0.5 +0.0 +0.3
auxotrophy YNB Glucose -0.3 +0.6 +0.1 +0.2 +0.5
ypd buoyancy 40 hrs Median Buoyancy +0.9 -0.0 -0.0 +0.2 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.7 +0.4 +0.8 +0.2 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +1.3 +0.7 +0.3 +0.3 +0.1
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