Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12873 and 12874 overlap by 2 nucleotides12874 and 12875 are separated by 258 nucleotides12875 and 12876 are separated by 308 nucleotides12876 and 12877 are separated by 122 nucleotides mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395 12873 mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874 mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501 12877
Group Condition mRNA_4505 mRNA_4506 mRNA_4507 mRNA_4508 mRNA_4509
12873 12874 12875 12876 12877
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 -0.8 -0.4 -0.7 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.5 -0.8 +0.1 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.4 -0.1 +0.1 -0.5
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.5 +0.0 +0.3 -0.4
growth on oleic acid YNB Oleic Acid -0.3 -0.7 +0.0 +0.2 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 -1.0 -0.4 +0.1 +0.8
facs on lipid accumulation Sorted High BODIPY Gate +0.6 -0.2 -0.1 -0.4 -0.1
growth on ypd YPD +0.7 -0.4 +0.2 -0.1 -0.6
growth on ricinoleic acid YNB Glucose -0.1 -0.3 -0.0 +0.2 +0.2
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.0 +0.2 +0.2 -0.4
growth on oleic acid YNB Glucose -0.1 -0.1 -0.3 +0.2 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.2 -0.2 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.8 +0.1 +0.3 +0.9
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 +0.0 -0.1 +0.1 +0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 +0.2 +0.5 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 +0.8 +0.2 +0.2 -0.8
auxotrophy Dropout Complete +0.4 -0.3 -0.1 +0.4 +0.7
auxotrophy YNB Glucose 75mM Methionine +0.4 -0.2 -0.1 +0.2 +0.9
facs on lipid accumulation Sorted No BODIPY Gate +0.7 +0.3 +0.3 +0.1 +0.0
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.1 +0.0 +0.5 +1.2
auxotrophy YNB Glucose +0.6 +0.1 +0.2 +0.5 +0.8
remove
mRNA_4505
plot
remove
mRNA_4506
plot
remove
mRNA_4507
remove
mRNA_4508
plot
remove
mRNA_4509
plot