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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12873 and 12874 overlap by 2 nucleotides
12874 and 12875 are separated by 258 nucleotides
12875 and 12876 are separated by 308 nucleotides
12876 and 12877 are separated by 122 nucleotides
mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395
12873
mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797
12874
mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341,056 to 342,749
12875
mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136
12876
mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501
12877
Group
Condition
mRNA
_4505
mRNA
_4506
mRNA
_4507
mRNA
_4508
mRNA
_4509
12873
12874
12875
12876
12877
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.8
-0.4
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.5
-0.8
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
-0.1
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
+0.0
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.3
-0.7
+0.0
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-1.0
-0.4
+0.1
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.2
-0.1
-0.4
-0.1
growth on ypd
YPD
+0.7
-0.4
+0.2
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.0
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.2
+0.2
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.3
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.8
+0.1
+0.3
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
-0.1
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.2
+0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.8
+0.2
+0.2
-0.8
auxotrophy
Dropout Complete
+0.4
-0.3
-0.1
+0.4
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-0.1
+0.2
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.3
+0.3
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.0
+0.5
+1.2
auxotrophy
YNB Glucose
+0.6
+0.1
+0.2
+0.5
+0.8
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