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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12876 and 12877 are separated by 122 nucleotides
12877 and 12878 are separated by 689 nucleotides
12878 and 12879 are separated by 1443 nucleotides
12879 and 12880 are separated by 432 nucleotides
mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343,058 to 345,136
12876
mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501
12877
mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348,191 to 349,956
12878
mRNA_4511: 12879 - Hypothetical Protein, at 351,400 to 352,761
12879
mRNA_4512: 12880 - KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain, at 353,194 to 354,896
12880
Group
Condition
mRNA
_4508
mRNA
_4509
mRNA
_4510
mRNA
_4511
mRNA
_4512
12876
12877
12878
12879
12880
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
-0.2
+0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.2
+0.1
-0.1
-0.6
growth on ypd
YPD
-0.1
-0.6
-0.0
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-0.8
+0.0
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.4
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
-0.0
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
-0.3
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.5
-0.1
-0.6
growth on oleic acid
YNB Glucose
+0.2
+0.4
+0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.2
-0.3
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.9
-0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
-0.0
-0.1
+0.1
auxotrophy
Dropout Complete
+0.4
+0.7
-0.3
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
+0.0
+0.0
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+1.2
-0.5
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.8
-0.4
+0.0
+0.7
auxotrophy
YNB Glucose
+0.5
+0.8
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.9
-0.0
-0.1
+0.6
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