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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12878 and 12879 are separated by 1443 nucleotides
12879 and 12880 are separated by 432 nucleotides
12880 and 12881 are separated by 417 nucleotides
12881 and 12882 are separated by 207 nucleotides
mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348,191 to 349,956
12878
mRNA_4511: 12879 - Hypothetical Protein, at 351,400 to 352,761
12879
mRNA_4512: 12880 - KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain, at 353,194 to 354,896
12880
mRNA_4513: 12881 - K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase, at 355,314 to 357,879
12881
mRNA_4514: 12882 - K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma, at 358,087 to 360,216
12882
Group
Condition
mRNA
_4510
mRNA
_4511
mRNA
_4512
mRNA
_4513
mRNA
_4514
12878
12879
12880
12881
12882
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
-0.6
N.D.
-2.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.6
N.D.
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.1
N.D.
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.2
N.D.
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
-0.4
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.2
N.D.
-0.4
auxotrophy
Dropout Complete
-0.3
-0.1
+0.3
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.0
+0.6
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.0
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
N.D.
+0.2
growth on ypd
YPD
-0.0
+0.1
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.2
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
-0.1
N.D.
+1.0
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
+0.7
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.0
+0.7
N.D.
+1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
+0.6
N.D.
+1.4
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