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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12880 and 12881 are separated by 417 nucleotides
12881 and 12882 are separated by 207 nucleotides
12882 and 12883 are separated by 432 nucleotides
12883 and 12884 are separated by 79 nucleotides
mRNA_4512: 12880 - KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain, at 353,194 to 354,896
12880
mRNA_4513: 12881 - K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase, at 355,314 to 357,879
12881
mRNA_4514: 12882 - K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma, at 358,087 to 360,216
12882
mRNA_4515: 12883 - SUPERFAMILY--SSF51735, at 360,649 to 361,233
12883
mRNA_4516: 12884 - BLAST ketoreductase [Coccidioides immitis RS], at 361,313 to 361,864
12884
Group
Condition
mRNA
_4512
mRNA
_4513
mRNA
_4514
mRNA
_4515
mRNA
_4516
12880
12881
12882
12883
12884
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-2.1
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-1.0
-1.8
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-1.4
-0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.5
-0.9
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.4
-1.4
-0.0
auxotrophy
Dropout Complete
+0.3
N.D.
-0.6
-0.9
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.3
-0.7
-0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.0
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
-0.6
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.9
+0.9
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.4
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.3
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.3
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.2
-0.1
+0.1
growth on ypd
YPD
-0.2
N.D.
+0.2
+0.5
-0.2
growth on ricinoleic acid
YNB Glucose
+0.7
N.D.
+0.3
-0.8
+0.1
auxotrophy
YNB Glucose
+0.2
N.D.
+0.6
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+1.0
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.5
+0.7
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
N.D.
+1.4
-0.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
N.D.
+1.4
-0.1
+0.2
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