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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12882 and 12883 are separated by 432 nucleotides
12883 and 12884 are separated by 79 nucleotides
12884 and 12885 are separated by 4366 nucleotides
12885 and 12886 are separated by 1815 nucleotides
mRNA_4514: 12882 - K03241 EIF2B3 translation initiation factor eIF-2B subunit gamma, at 358,087 to 360,216
12882
mRNA_4515: 12883 - SUPERFAMILY--SSF51735, at 360,649 to 361,233
12883
mRNA_4516: 12884 - BLAST ketoreductase [Coccidioides immitis RS], at 361,313 to 361,864
12884
mRNA_4517: 12885 - K03685 rnc, DROSHA, RNT1 ribonuclease III, at 366,231 to 367,464
12885
mRNA_4518: 12886 - Hypothetical Protein, at 369,280 to 370,567
12886
Group
Condition
mRNA
_4514
mRNA
_4515
mRNA
_4516
mRNA
_4517
mRNA
_4518
12882
12883
12884
12885
12886
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.1
-0.9
-0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-1.8
-0.0
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-1.4
-0.0
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.2
-0.1
N.D.
-1.1
auxotrophy
Dropout Complete
-0.6
-0.9
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
-0.5
-0.3
N.D.
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.9
-0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.0
-0.3
+0.1
N.D.
-1.0
growth on ypd
YPD
+0.2
+0.5
-0.2
N.D.
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.2
+0.1
N.D.
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.9
+0.3
N.D.
-1.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.8
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+1.0
-0.2
-0.0
N.D.
-1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.7
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose
+0.6
-0.2
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
-0.8
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
-0.0
N.D.
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.7
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
-0.1
+0.2
N.D.
+0.7
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