Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12887 and 12888 are separated by 887 nucleotides
12888 and 12889 are separated by 250 nucleotides
12889 and 12890 are separated by 127 nucleotides
12890 and 12891 are separated by 27 nucleotides
mRNA_4519: 12887 - Hypothetical Protein, at 371,547 to 373,000
12887
mRNA_4520: 12888 - Hypothetical Protein, at 373,888 to 374,415
12888
mRNA_4521: 12889 - SUPERFAMILY--SSF117018, at 374,666 to 375,210
12889
mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134
12890
mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234
12891
Group
Condition
mRNA
_4519
mRNA
_4520
mRNA
_4521
mRNA
_4522
mRNA
_4523
12887
12888
12889
12890
12891
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-1.2
-2.1
-0.1
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-2.3
+0.7
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
-0.3
-0.8
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.2
+0.1
+0.3
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.3
+0.1
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-1.2
+0.3
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
-0.2
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.5
-0.7
+0.8
+0.5
growth on oleic acid
YNB Glucose
-0.0
-0.5
+0.2
+0.2
+0.1
auxotrophy
YNB Glucose
-0.2
-0.2
-0.3
+0.6
+0.0
growth on ypd
YPD
-0.3
-0.7
+0.3
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.5
+0.1
+0.6
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
-0.0
+0.6
auxotrophy
Dropout Complete
+0.1
+0.7
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.3
+0.5
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.6
-0.1
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
+0.5
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
+0.5
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+0.0
+0.5
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
+0.0
+0.4
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.2
+0.2
+0.4
+0.1
remove
mRNA_4519
plot
remove
mRNA_4520
plot
remove
mRNA_4521
remove
mRNA_4522
plot
remove
mRNA_4523
plot