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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12888 and 12889 are separated by 250 nucleotides
12889 and 12890 are separated by 127 nucleotides
12890 and 12891 are separated by 27 nucleotides
12891 and 12892 are separated by 405 nucleotides
mRNA_4520: 12888 - Hypothetical Protein, at 373,888 to 374,415
12888
mRNA_4521: 12889 - SUPERFAMILY--SSF117018, at 374,666 to 375,210
12889
mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134
12890
mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234
12891
mRNA_4524: 12892 - Hypothetical Protein, at 379,640 to 380,547
12892
Group
Condition
mRNA
_4520
mRNA
_4521
mRNA
_4522
mRNA
_4523
mRNA
_4524
12888
12889
12890
12891
12892
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-2.1
-0.1
+0.6
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
-0.8
+0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-2.3
+0.7
+0.1
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.2
+0.2
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-1.2
+0.3
+0.4
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.3
+0.1
+0.4
growth on ypd
YPD
-0.7
+0.3
+0.3
+0.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.7
+0.8
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.1
+0.6
+0.0
+0.2
auxotrophy
YNB Glucose
-0.2
-0.3
+0.6
+0.0
+0.2
growth on oleic acid
YNB Glucose
-0.5
+0.2
+0.2
+0.1
+0.4
auxotrophy
Dropout Complete
+0.7
-0.2
+0.0
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
+0.1
+0.3
+0.4
+1.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-0.0
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
+0.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.5
+0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
-0.0
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.5
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.0
+0.4
+0.7
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.0
+0.5
+0.8
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.2
+0.4
+0.1
+0.5
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