Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12889 and 12890 are separated by 127 nucleotides
12890 and 12891 are separated by 27 nucleotides
12891 and 12892 are separated by 405 nucleotides
12892 and 12893 are separated by 460 nucleotides
mRNA_4521: 12889 - SUPERFAMILY--SSF117018, at 374,666 to 375,210
12889
mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134
12890
mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234
12891
mRNA_4524: 12892 - Hypothetical Protein, at 379,640 to 380,547
12892
mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381,008 to 382,487
12893
Group
Condition
mRNA
_4521
mRNA
_4522
mRNA
_4523
mRNA
_4524
mRNA
_4525
12889
12890
12891
12892
12893
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.8
+0.3
-0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.1
+0.6
+0.8
-0.4
auxotrophy
Dropout Complete
-0.2
+0.0
+0.1
-0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.3
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.1
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.6
+0.0
+0.2
-0.6
auxotrophy
YNB Glucose
-0.3
+0.6
+0.0
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
+0.1
+0.2
-0.1
growth on ypd
YPD
+0.3
+0.3
+0.5
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.6
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.5
+0.5
+0.1
-0.5
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.1
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.0
+0.5
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.8
+0.5
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.5
+0.5
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
+0.7
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
+0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.4
+0.1
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
+0.1
-0.0
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.5
+0.8
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
+0.4
+1.0
+0.3
remove
mRNA_4521
plot
remove
mRNA_4522
plot
remove
mRNA_4523
remove
mRNA_4524
plot
remove
mRNA_4525
plot