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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12890 and 12891 are separated by 27 nucleotides
12891 and 12892 are separated by 405 nucleotides
12892 and 12893 are separated by 460 nucleotides
12893 and 12894 are separated by 256 nucleotides
mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134
12890
mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234
12891
mRNA_4524: 12892 - Hypothetical Protein, at 379,640 to 380,547
12892
mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381,008 to 382,487
12893
mRNA_4526: 12894 - K12446 E2.7.1.46 L-arabinokinase, at 382,744 to 384,550
12894
Group
Condition
mRNA
_4522
mRNA
_4523
mRNA
_4524
mRNA
_4525
mRNA
_4526
12890
12891
12892
12893
12894
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.3
-0.5
+0.2
-0.0
auxotrophy
Dropout Complete
+0.0
+0.1
-0.2
-0.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
+0.8
-0.4
-0.8
growth on ypd
YPD
+0.3
+0.5
-0.3
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.5
+0.3
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.5
+0.1
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.0
+0.2
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
+0.2
-0.1
+0.0
auxotrophy
YNB Glucose
+0.6
+0.0
+0.2
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.6
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
+0.4
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.5
+0.2
+0.3
-0.6
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.4
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
+0.5
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.7
+0.0
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
+0.4
+0.1
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
+0.4
+0.4
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
+1.0
+0.3
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.8
+0.3
-0.0
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.5
+0.1
+0.4
+1.2
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