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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12896 and 12897 are separated by 801 nucleotides
12897 and 12898 are separated by 2225 nucleotides
12898 and 12899 are separated by 92 nucleotides
12899 and 12900 are separated by 329 nucleotides
mRNA_4528: 12896 - Hypothetical Protein, at 386,739 to 388,320
12896
mRNA_4529: 12897 - HMMPfam-Galactose oxidase, central domain-PF13418,SUPERFAMILY--SSF117281, at 389,122 to 390,984
12897
mRNA_4530: 12898 - K00605 gcvT, AMT aminomethyltransferase, at 393,210 to 395,082
12898
mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395,175 to 396,195
12899
mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396,525 to 397,973
12900
Group
Condition
mRNA
_4528
mRNA
_4529
mRNA
_4530
mRNA
_4531
mRNA
_4532
12896
12897
12898
12899
12900
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-3.0
-0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
-1.4
-0.1
-0.9
auxotrophy
Dropout Complete
-0.5
-0.2
-0.7
-0.4
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.5
+0.4
-0.1
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
-0.8
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.7
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
-0.5
-1.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.5
+0.0
-1.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.5
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.1
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.5
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.4
-0.2
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.8
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
-0.3
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
-0.1
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.0
-0.4
+0.6
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.2
-0.1
+0.3
auxotrophy
YNB Glucose
+0.4
+0.2
+0.2
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.3
+0.2
+0.4
growth on ypd
YPD
+1.3
+0.6
+0.2
-0.9
-0.3
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