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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12897 and 12898 are separated by 2225 nucleotides
12898 and 12899 are separated by 92 nucleotides
12899 and 12900 are separated by 329 nucleotides
12900 and 12901 are separated by 200 nucleotides
mRNA_4529: 12897 - HMMPfam-Galactose oxidase, central domain-PF13418,SUPERFAMILY--SSF117281, at 389,122 to 390,984
12897
mRNA_4530: 12898 - K00605 gcvT, AMT aminomethyltransferase, at 393,210 to 395,082
12898
mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395,175 to 396,195
12899
mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396,525 to 397,973
12900
mRNA_4533: 12901 - Hypothetical Protein, at 398,174 to 399,920
12901
Group
Condition
mRNA
_4529
mRNA
_4530
mRNA
_4531
mRNA
_4532
mRNA
_4533
12897
12898
12899
12900
12901
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-3.0
-0.3
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.4
-0.1
-1.7
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
-1.0
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.4
-0.1
-0.9
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.8
-0.1
-0.2
-0.4
auxotrophy
Dropout Complete
-0.2
-0.7
-0.4
-0.6
-0.0
growth on oleic acid
YNB Glucose
-0.1
-0.7
-0.2
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.0
-1.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.5
-0.2
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
-0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.8
+0.1
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
+0.1
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
-0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.1
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+0.3
-0.5
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
+0.3
-0.1
growth on ypd
YPD
+0.6
+0.2
-0.9
-0.3
+0.3
auxotrophy
YNB Glucose
+0.2
+0.2
-0.0
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.6
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
+0.5
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.2
+0.4
+0.2
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