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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12903 and 12904 are separated by 580 nucleotides
12904 and 12905 are separated by 375 nucleotides
12905 and 12906 are separated by 139 nucleotides
12906 and 12907 are separated by 80 nucleotides
mRNA_4535: 12903 - Hypothetical Protein, at 402,768 to 403,548
12903
mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404,129 to 405,942
12904
mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422
12905
mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663
12906
mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303
12907
Group
Condition
mRNA
_4535
mRNA
_4536
mRNA
_4537
mRNA
_4538
mRNA
_4539
12903
12904
12905
12906
12907
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.1
-1.8
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.5
+0.4
-1.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.7
+0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.3
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.0
-0.6
N.D.
growth on oleic acid
YNB Glucose
-0.5
+0.1
+0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+0.0
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.5
-0.1
-0.1
N.D.
auxotrophy
Dropout Complete
+0.2
+0.1
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.4
-0.0
+0.8
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.2
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
+0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.5
+0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.3
+0.8
N.D.
auxotrophy
YNB Glucose
-0.1
-0.0
+0.2
+0.7
N.D.
growth on ypd
YPD
+0.6
-0.4
+0.3
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.3
+1.3
N.D.
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