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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12904 and 12905 are separated by 375 nucleotides
12905 and 12906 are separated by 139 nucleotides
12906 and 12907 are separated by 80 nucleotides
12907 and 12908 are separated by 181 nucleotides
mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404,129 to 405,942
12904
mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422
12905
mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663
12906
mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303
12907
mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287
12908
Group
Condition
mRNA
_4536
mRNA
_4537
mRNA
_4538
mRNA
_4539
mRNA
_4540
12904
12905
12906
12907
12908
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-1.8
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.4
-1.5
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
+0.1
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
+0.8
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.7
+0.6
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
N.D.
-0.2
auxotrophy
Dropout Complete
+0.1
-0.2
+0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.1
N.D.
-0.0
growth on ypd
YPD
-0.4
+0.3
+0.7
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.0
-0.6
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.4
+0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.8
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
+0.0
+0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
+0.0
N.D.
+0.3
auxotrophy
YNB Glucose
-0.0
+0.2
+0.7
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+1.3
N.D.
-0.8
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