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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12905 and 12906 are separated by 139 nucleotides
12906 and 12907 are separated by 80 nucleotides
12907 and 12908 are separated by 181 nucleotides
12908 and 12909 are separated by 873 nucleotides
mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422
12905
mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663
12906
mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303
12907
mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287
12908
mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417,161 to 419,747
12909
Group
Condition
mRNA
_4537
mRNA
_4538
mRNA
_4539
mRNA
_4540
mRNA
_4541
12905
12906
12907
12908
12909
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.8
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
N.D.
-0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.6
N.D.
+0.4
-0.0
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.8
N.D.
-0.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
N.D.
-0.7
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-1.5
N.D.
-0.4
+1.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.6
N.D.
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+0.4
+0.0
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.8
N.D.
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.4
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose
+0.2
+0.7
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.3
N.D.
-0.8
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.5
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
N.D.
+0.6
-0.1
growth on ypd
YPD
+0.3
+0.7
N.D.
-0.3
+0.5
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