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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12906 and 12907 are separated by 80 nucleotides
12907 and 12908 are separated by 181 nucleotides
12908 and 12909 are separated by 873 nucleotides
12909 and 12910 are separated by 1002 nucleotides
mRNA_4538: 12906 - KOG2112 Lysophospholipase, at 409,562 to 410,663
12906
mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410,744 to 412,303
12907
mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412,485 to 416,287
12908
mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417,161 to 419,747
12909
mRNA_4542: 12910 - K05302 SETD6 N-lysine methyltransferase SETD6, at 420,750 to 422,529
12910
Group
Condition
mRNA
_4538
mRNA
_4539
mRNA
_4540
mRNA
_4541
mRNA
_4542
12906
12907
12908
12909
12910
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
N.D.
-0.1
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.7
+0.5
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
N.D.
+0.4
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.4
-0.1
-0.3
auxotrophy
Dropout Complete
+0.2
N.D.
+0.0
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
N.D.
-0.4
+1.6
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.6
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.3
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.6
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.2
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
+0.3
+0.2
auxotrophy
YNB Glucose
+0.7
N.D.
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
N.D.
-0.8
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
N.D.
-0.6
-0.2
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.3
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
N.D.
-0.0
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+0.4
-0.0
+0.2
growth on ypd
YPD
+0.7
N.D.
-0.3
+0.5
+0.4
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