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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12913 and 12914 are separated by 286 nucleotides
12914 and 12915 are separated by 1213 nucleotides
12915 and 12916 are separated by 380 nucleotides
12916 and 12917 are separated by 682 nucleotides
mRNA_4545: 12913 - K11088 SNRPD3, SMD3 small nuclear ribonucleoprotein D3, at 427,882 to 428,716
12913
mRNA_4546: 12914 - K16576 ACTR10, ARP11 actin-related protein 10, at 429,003 to 431,242
12914
mRNA_4547: 12915 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 432,456 to 433,199
12915
mRNA_4548: 12916 - K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase, at 433,580 to 435,269
12916
mRNA_4549: 12917 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 435,952 to 437,989
12917
Group
Condition
mRNA
_4545
mRNA
_4546
mRNA
_4547
mRNA
_4548
mRNA
_4549
12913
12914
12915
12916
12917
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.5
-0.9
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-2.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.8
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-1.4
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.6
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.0
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.6
-0.5
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.7
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.2
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.6
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
+0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+1.1
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+1.0
+0.5
+0.3
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