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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12916 and 12917 are separated by 682 nucleotides
12917 and 12918 are separated by 93 nucleotides
12918 and 12919 are separated by 231 nucleotides
12919 and 12920 are separated by 425 nucleotides
mRNA_4548: 12916 - K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase, at 433,580 to 435,269
12916
mRNA_4549: 12917 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 435,952 to 437,989
12917
mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438,083 to 440,152
12918
mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440,384 to 442,291
12919
mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442,717 to 444,581
12920
Group
Condition
mRNA
_4548
mRNA
_4549
mRNA
_4550
mRNA
_4551
mRNA
_4552
12916
12917
12918
12919
12920
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.0
-0.7
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.8
-0.4
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
-0.2
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.7
+0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
-0.4
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.3
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.3
+0.4
-0.1
-0.0
growth on ypd
YPD
-0.2
-0.2
-0.3
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
+0.2
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.3
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
-0.1
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
+0.0
+0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-0.5
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.4
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.3
+0.5
-0.2
auxotrophy
YNB Glucose
+0.5
+0.3
-0.2
+0.6
-0.6
auxotrophy
Dropout Complete
+0.4
+0.0
-0.1
+0.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
+0.1
+0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.7
+0.4
-0.1
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