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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12918 and 12919 are separated by 231 nucleotides
12919 and 12920 are separated by 425 nucleotides
12920 and 12921 are separated by 948 nucleotides
12921 and 12922 are separated by 122 nucleotides
mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438,083 to 440,152
12918
mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440,384 to 442,291
12919
mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442,717 to 444,581
12920
mRNA_4553: 12921 - SUPERFAMILY--SSF81383, at 445,530 to 447,635
12921
mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447,758 to 451,562
12922
Group
Condition
mRNA
_4550
mRNA
_4551
mRNA
_4552
mRNA
_4553
mRNA
_4554
12918
12919
12920
12921
12922
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.0
-0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
-0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.2
-0.4
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.0
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.0
+0.0
-0.0
N.D.
auxotrophy
YNB Glucose
-0.2
+0.6
-0.6
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.5
-0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
+0.5
-0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
+0.2
N.D.
growth on ypd
YPD
-0.3
+0.3
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.5
-0.0
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.0
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.4
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.1
+0.4
N.D.
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